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Creators/Authors contains: "McHardy, Alice C"

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Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit

https://doi.org/10.1038/s41596-020-00480-3

Meyer, Fernando; Lesker, Till-Robin; Koslicki, David; Fritz, Adrian; Gurevich, Alexey; Darling, Aaron E.; Sczyrba, Alexander; Bremges, Andreas; McHardy, Alice C. (April 2021, Nature Protocols)
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Assessing taxonomic metagenome profilers with OPAL

https://doi.org/10.1186/s13059-019-1646-y

Meyer, Fernando; Bremges, Andreas; Belmann, Peter; Janssen, Stefan; McHardy, Alice C.; Koslicki, David (December 2019, Genome Biology)

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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

https://doi.org/10.1038/s41564-025-02186-2

Kelliher, Julia M; Mirzayi, Chloe; Bordenstein, Sarah R; Oliver, Aaron; Kellogg, Christina A; Hatcher, Eneida L; Berg, Maureen; Baldrian, Petr; Aljumaah, Mashael; Miller, Cassandra_Maria Luz; et al (December 2025, Nature Microbiology)

Free, publicly-accessible full text available December 1, 2026
Toward unrestricted use of public genomic data

https://doi.org/10.1126/science.aaw1280

Amann, Rudolf I.; Baichoo, Shakuntala; Blencowe, Benjamin J.; Bork, Peer; Borodovsky, Mark; Brooksbank, Cath; Chain, Patrick S.; Colwell, Rita R.; Daffonchio, Daniele G.; Danchin, Antoine; et al (January 2019, Science)

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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

https://doi.org/10.1186/s13059-019-1835-8

Zhou, Naihui; Jiang, Yuxiang; Bergquist, Timothy R.; Lee, Alexandra J.; Kacsoh, Balint Z.; Crocker, Alex W.; Lewis, Kimberley A.; Georghiou, George; Nguyen, Huy N.; Hamid, Md Nafiz; et al (December 2019, Genome Biology)

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